Software

SOFTWARE DEVELOPMENT TEAM:    SRUTI   DAS   CHOUDHURY, SRINIDHI BASHYAM, SRIKANTH MATURU

A. 2D Plant Phenotyping Tool
Windows x64 -  Download here    

Software to compute 2D plant phenotypes. 

Following 2D plant phenotypes will be computed for each plant in the input lemnatec dataset directory:

  • Convex hull area of each side view of the plant.
  • Plant pixel area of each side view of the plant.
  • Ratio of plant pixel area and convex hull area of each side view of the plant.
  • Bounding box height of side view 0 degrees of the plant.
  • Top view enclosing circle diameter of the plant.
  • Aspect ratio bounding box height/top view enclosing circle diameter.

PHENOTYPE NAME Bi-angular convex-hull area ratio    Download Sourcecode  
PHENOTYPE SIGNIFICANCE Phyllotaxy
PROGRAMMING LANGUAGE OpenCV 2.4.9, C++
PHENOTYPE NAME Plant aspect ratio    Download Sourcecode  
PHENOTYPE SIGNIFICANCE Canopy architecture

If you use this software to generate results for your publication, please acknowledge software developers and cite our paper:
S. D. Choudhury, V. Stoerger, A. Samal, J. C. Schnable, Z. Liang, J-G. Yu, Automated Vegetative Stage Phenotyping Analysis of Maize Plants using Visible Light Images, KDD workshop on Data Science for Food, Energy and Water (KDD -DSFEW), San Francisco, California, USA, 2016.

B. Leaf detection and component phenotype computation software

Download here  

If you use this software to generate results for your publication, please acknowledge software developers and cite our paper: 

S. D.  Choudhury, S. Bashyam, Y. Qui, A. Samal, T. Awada, “Holistic and Component Plant Phenotyping using Visible Light Image Sequence”, Plant Methods, 14:35, 2018.